Scaffold Ga0097621_101206756

Overview

Basic Information

• Taxon OID: 3300006237
• Scaffold ID: Ga0097621_101206756
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 713
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: South Gull Lake, Michigan
• Coordinates
  • Lat. (^o): 42.405765
  • Long. (^o): -85.399014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022436	Metagenome	214	Y
F028841	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0097621_1012067562	F028841	AGGAGG	MSDLQAIADKLEQAMASLRLVSYGAISAVGYGLVLDARCLLAEALGRLDSVRKQGAA*
Ga0097621_1012067563	F022436	AGGAG	MLKPQRVFRNHYICDACDHEFADEMLVVSSSYCPACDAEIEPYSSEDLFDIEAYDDEEEVA*