Scaffold Ga0099364_10030278

Overview

Basic Information

• Taxon OID: 3300006226
• Scaffold ID: Ga0099364_10030278
• Source Dataset Name: Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6568
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Termopsidae → Termopsinae → Termopsini → Zootermopsis → Zootermopsis nevadensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004932	Metagenome	418	Y
F006470	Metagenome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099364_1003027810	F004932	N/A	MSTLLTEVKEIFSFQQGLSGEAVRLIADGCQHLKKLKLEGVKGISNEDVIHVIKKLGKQLTALTLHGKGLTDVVYSYLNNCKR*
Ga0099364_100302785	F006470	N/A	MTDRGLLEGIGSLHELRILRLMKVHNLTAQGLSMFLHRHSMISIESLVLKECPNLDDEGLNGIAKRCNKLTYLHV*