Scaffold Ga0075445_10062232

Overview

Basic Information

• Taxon OID: 3300006193
• Scaffold ID: Ga0075445_10062232
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1455
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016596	Metagenome / Metatranscriptome	246	Y
F018080	Metagenome	237	Y
F052205	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075445_100622323	F016596	N/A	MTKKYSLLKIRQSRNEFEALLRIYGISNSTLCKVIGVNYATSRDFIKIPTNLRFIHAHRLADFIGLTVQDVVDTIVYDLNKQ*
Ga0075445_100622324	F018080	N/A	MEYLNIEIFKHFLKVYTYIVWNNKSMLGFIIEDDIMKLLDEKQMIDFYHFDKTNFKVLASKVDKYLHSND*
Ga0075445_100622325	F052205	N/A	MSLSNQDIDELFDGKPSELTYSQWLTIEGNIEFTSLTTTMKADILNRLNDLSEEEAEEIITKLYNNRYEKDPQKQWLKMLKDGVFKHRDF*