Scaffold Ga0075446_10066441

Overview

Basic Information

• Taxon OID: 3300006190
• Scaffold ID: Ga0075446_10066441
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1092
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F034715	Metagenome / Metatranscriptome	174	Y
F059364	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075446_100664411	F034715	N/A	EHGPMMDNDTHCSRCGEKHGATHHEEEMTGWEDEDIEAEVEEIF*
Ga0075446_100664412	F059364	AGGAG	MKTLLVSGCSFGMVYSEIEKELKDLFGVDEVVNLSQFGASPDRQIRVAIEWIAQNGKPDMVIMPVSHYNRFDLPIANKFDPLHNLHHKSNWHSIINHDDIDTDIVSLENLKTYMKSGAIVHTVQHTEHDKLFVKLITFQAYLELNKIRHLIFDTGNYYEKLWMQYLSIDDENNSGYQPGMKKRDLIENSTGIYRLLSFCSNVWMYEQLTEDEKKNYIPWGETDTLRYPLDDDGKATIHHQKEQVLKLIKHLQQEGAVHG*
Ga0075446_100664413	F000302	AGGAG	MVETMTQDTKDKIRDLEGQKILLEDRLEHLGYASNLVKMHEIESEIFEIED