Scaffold Ga0079043

Basic Information
Taxon OID	3300006179 Open in IMG/M
Scaffold ID	Ga0079043_1002863 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006179 Open in IMG/M

Scaffold ID

Ga0079043_1002863 Open in IMG/M

Source Dataset Name

Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2494
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2494

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park
Coordinates	Lat. (^o)	44.7219	Long. (^o)	-110.7021	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Yellowstone National Park

Coordinates

Lat. (^o)

44.7219

Long. (^o)

-110.7021

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F045200	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079043_10028632	F008949	AGGAGG	MSSQTITLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNHTIDIRFTCNKYKQVVVPSNPLSSPTVQTVQKTIQECVDEWYNQHKSVYEVA*
Ga0079043_10028633	F011097	GGAGG	MIRVIPLYSSSGTDPITNLPTSFGLPIVGNGSSGQLLRFHPNYARLLIAITGLSGTSPSIQFTVGSYYGSNNYTLPPITSPQYVYIIGNENKTIITYLNTSGQVLQQVELPYNIFLNGVNVSWSVSGTSPSISAYIDFEIEDEEEGE*
Ga0079043_10028634	F045200	N/A	DDTVLMYFSIMVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDSTVEQAISGLPGTGLGNSIQFQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPLYMIFYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIENTPNGFPAFGELTFLPENLQTCPSSYNGYSFYCIPILGFAPVLDMFDLGLNIDKFGSIVPGESFGIHGAYIIPITLPPRPDWGGISSMRMKVLYVAPIFHQFQGYVGLTFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSAISPKGKTLVTVPPNLILQSSPGGSYYTMHNGVTYTFGKKYARVYFSGSPSGYPGNAVIVNIYTRYRSTSIPDVLELLRIFPLQEANFGSLVYATDYSHLGHMGYPRTSKFRVDGQVLWIPSSFDVWGGVWVELEGD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079043_1002863

Overview

Ecosystem & Geography

Associated Families

Sequences