Scaffold Ga0075367_10329331

Overview

Basic Information

• Taxon OID: 3300006178
• Scaffold ID: Ga0075367_10329331
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 963
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002875	Metagenome / Metatranscriptome	524	Y
F020387	Metagenome / Metatranscriptome	224	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075367_103293311	F020387	AGG	MSSIEQAIKEAIDHGYQPNVERYPEMEGISPLQIAMAMQADVFIDPAFWKALGKKRGWTTDDDFKYWQKSVVEWEEKYWKKFWHRFIDHLAEGKDAESFFQS
Ga0075367_103293312	F002875	GAG	MRGLKVAMLTAATAWAVPAMAGDDAFMQAVNYVFSGNVEGKTPQLVTSIVDENRCIISVETPGNSWLYYLKEIRPDKIMIDENNGRISFEGDGTIVEHTFDFLPKVDKDNKNSIMLRGDAGRTREALKLIFTKYCLPKSG*