Scaffold Ga0070765_100052582

Overview

Basic Information

• Taxon OID: 3300006176
• Scaffold ID: Ga0070765_100052582
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3333
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024594	Metagenome / Metatranscriptome	205	Y
F046502	Metagenome / Metatranscriptome	151	Y
F062067	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070765_1000525822	F062067	AGGAG	MKKLLTTLAVLAAFATPAFAQYAPQDYQTAAPPSVQHKSAARQNGLHAFAMVPRAPAGSSLDDPSLTGGGSTGYNEMNRSY*
Ga0070765_1000525823	F046502	GGA	MALKYLVRLATKTFVVLGVGMSLSTAAPAFSESPSYPWRAQGSIIRCWYMTREQCEEAVNYHGFCVTDPNVPRRYGEKIRG*
Ga0070765_1000525824	F024594	AGGAG	MSATKLVAAVALLLSATSAALAQGPQCYGDRPYYDFYGAGWLDSELHLGVDCNIAPPASAHPRGRSRHAAADSQQRSIFR*