Scaffold Ga0070765_100018833

Overview

Basic Information

• Taxon OID: 3300006176
• Scaffold ID: Ga0070765_100018833
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5101
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000174	Metagenome / Metatranscriptome	1764	Y
F000410	Metagenome / Metatranscriptome	1170	Y
F004611	Metagenome / Metatranscriptome	431	Y
F034646	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070765_1000188333	F000174	GAGG	MKNVYEVLRQKELELARLEKEVEALRVAAPLLSDDKDSMVETSSNKPTLASPTTTQQPIRIPQAAVNASPQPARAAGWEDTAKRWP*
Ga0070765_1000188335	F004611	N/A	MRGTIFVADSRSNSRRWTVIASALLCCGLGLVVIYTKRNAFFSPLAVVVVAAIGLAAVLLQLRYYNREHSNPVHAPMWLNIVGVVFALTALFADVLDLSGQMAEVMALGAVGSFAISSAVILHTFRKRRTTSTER*
Ga0070765_1000188337	F000410	GAGG	MRRKLIWIEQPRFQGFGCSECGWRFKSSGELTGTSFDEMMRNFELQRDKEFSVHVCADHPATRAKSKNTE*
Ga0070765_1000188338	F034646	N/A	MDPEARRKARIAVLQEEIVVIHRANQLFWREANPSDAAKTDYYRRQDRLEEIRSELAELQEG*