Scaffold Ga0070712_100030068

Overview

Basic Information

• Taxon OID: 3300006175
• Scaffold ID: Ga0070712_100030068
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3646
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006159	Metagenome / Metatranscriptome	380	Y
F006521	Metagenome / Metatranscriptome	371	Y
F067155	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070712_1000300683	F067155	GAG	MTVEPITVWAAFGSFVLGVLVGALVVLDELKRARRRWREATRTWHEIEAVAVELRDEFKELPRHNAPDLVAAIRDGVREQLKRKRSGRPDLFTYRCPRTGQQVQGSLPI*
Ga0070712_1000300685	F006159	GAG	MQCARDIEVIFPIKDAASATLMLIKADCLYTAGIINEAEKQYVHSRARTFLDHATLKDASFLKSHAAYNATI*
Ga0070712_1000300687	F006521	N/A	MNRGEIKVDHYYSMMPVNGRRTITRVTNLFKITAMAAQEEIGTETLELNPLVVRFVWRHAAYPTGWSTRRQQLLLDDFVVAAEKEVACT*