Scaffold Ga0066836_10015383

Overview

Basic Information

• Taxon OID: 3300006166
• Scaffold ID: Ga0066836_10015383
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4230
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F025142	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066836_100153831	F001066	N/A	MADDVFKIKKLDGTYIASEDKRKTLSKFNAAKHFKTANIPALCDQCVYRSIETGGNGKCPKYEAGAACGIRDDFVQFINEIDTRNPEDLKSMMDMIAKLSFENVLMALTQSKLDGNIPDRNTKSEINTLLNVVKSINDMNSKIVVTEKAEYNKEGDIAN
Ga0066836_100153836	F025142	AGGAG	MSIDMTPRAIEYKVKAGSRATLQLTISDSTGSAKNLSNSTTYATGKWKVWKTDGTLLINGDLIFDNRSNGEVSYALSATDATNAKAGRWEGEVELLDTNGAISEQTESFSFSIEESY*