Scaffold Ga0075441_10121968

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10121968
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 992
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012624	Metagenome	279	N
F015934	Metagenome / Metatranscriptome	251	N
F045368	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_101219681	F015934	GGAG	MRQTKELLFSGKHPRLITGASYSVYAIAIITGISNATLYRRLKGRDEVTEWDITPAHERNPERYGNKGRDSVGYSRLETATERLSAEWLRLAI*
Ga0075441_101219682	F012624	AGGAGG	MLNNYKGNSALIKQQKRERMEHYITDAVVWLSLSSGVVAMFTFLNWAMLARYGA*
Ga0075441_101219683	F045368	AGGAGG	MSNYKSAIDRLKRCESLGDIERALDGFKRVHQVGHLTDSELRRLDAKAFDIILDWEEEVTQC*