Scaffold Ga0075441_10099094

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10099094
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1119
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F018265	Metagenome / Metatranscriptome	236	Y
F020795	Metagenome / Metatranscriptome	222	Y
F051476	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100990941	F001048	N/A	SLRNMKIVSTKQFWWRLNDLKRKGGEIIVTDRTSEMDVKEYNRVESLVNKRVRWELGSEDYMKWDSCGFKDIPTLAKAYGIK*
Ga0075441_100990942	F051476	GAG	MTYWKVKLIIKDKLHKTELFESVEKARLWSMKESKLAVSHRMFNDTNIVTEITSHEFA*
Ga0075441_100990943	F020795	GAG	MKTSTLEVLNEGELIFGTRTNGSYFVREYEDGVEMAGSFFKTEEEAKAHIETLTEK*
Ga0075441_100990944	F018265	GAG	MELHTLRAVKLTQNIFELNRVNRELVTVRKIVTELETRKMELMSS*