Scaffold Ga0075441_10027305

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10027305
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2332
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100273054	F005796	GGAG	MLELAVLMFCMIGCGMTCYNLGKQEGIESTIEHLVDQGMIQVDDD*
Ga0075441_100273055	F084734	N/A	MKKYKSKPWTDTERKTLARYYYHACIDEMCSLLPDRTEQAIRNQVAYLRKRGYRFIK*
Ga0075441_100273057	F025150	GGAG	MINVSTEGKQLPEYDTFIDECIMALFPSDAQYDINIWFKKYVDKDGTHAGFCMGDEIESAIDIATHWMYEDAEEVAYEPHEIASNIAHELVHAKQFYKGQINMVDHVWKHNQETINCDGLEYADTPWEVEAYAYEDILTDLLWENV*
Ga0075441_100273059	F047922	GGAG	MMTPQEVTDYKNKWKMAAYFLVHVHSDDRAKVQAWCKDFCFQWRYDIKTLTDNYTDTVSFQLSEDCDAFQEWYENV*