Scaffold Ga0075441_10000933

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10000933
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14497
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014793	Metagenome / Metatranscriptome	260	Y
F022761	Metagenome	213	Y
F044736	Metagenome / Metatranscriptome	154	Y
F092752	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100009331	F022761	N/A	MKLKKYDIAITKPWSKEIYDHNDEVLSEVVDSIEKKWLVAYHDSENEYYIGSSDDELEFQDAEWSYEANAIMKDIQEAVLVTSYGSGFTMHAVHNDVLQELEVMAYWRAKEVAEDLSLLLSKEFIGLG*
Ga0075441_100009333	F014793	N/A	MFEEKVFWKDGFDGEAKGGLHFRSFDLNQFIKKVEKDGTEVVGIKFDGNNLELIIKK*
Ga0075441_100009334	F092752	N/A	MSLDSYYAMTAAKRNNTSVESQMKKRGYVKDYYIGAGAWQWKKVLKRLDI*
Ga0075441_100009337	F044736	N/A	MNQEKIQNQVTKNWNNKSQYDYDLMINVDKLITWDEYYEINKMHVEFEDGCEKLGFKLPFQS*