Basic Information | |
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Taxon OID | 3300006164 Open in IMG/M |
Scaffold ID | Ga0075441_10000933 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14497 |
Total Scaffold Genes | 37 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (21.62%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F014793 | Metagenome / Metatranscriptome | 260 | Y |
F022761 | Metagenome | 213 | Y |
F044736 | Metagenome / Metatranscriptome | 154 | Y |
F092752 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075441_100009331 | F022761 | N/A | MKLKKYDIAITKPWSKEIYDHNDEVLSEVVDSIEKKWLVAYHDSENEYYIGSSDDELEFQDAEWSYEANAIMKDIQEAVLVTSYGSGFTMHAVHNDVLQELEVMAYWRAKEVAEDLSLLLSKEFIGLG* |
Ga0075441_100009333 | F014793 | N/A | MFEEKVFWKDGFDGEAKGGLHFRSFDLNQFIKKVEKDGTEVVGIKFDGNNLELIIKK* |
Ga0075441_100009334 | F092752 | N/A | MSLDSYYAMTAAKRNNTSVESQMKKRGYVKDYYIGAGAWQWKKVLKRLDI* |
Ga0075441_100009337 | F044736 | N/A | MNQEKIQNQVTKNWNNKSQYDYDLMINVDKLITWDEYYEINKMHVEFEDGCEKLGFKLPFQS* |
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