Scaffold Ga0075441_10000643

Overview

Basic Information

• Taxon OID: 3300006164
• Scaffold ID: Ga0075441_10000643
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17631
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029568	Metagenome / Metatranscriptome	188	Y
F043093	Metagenome	157	Y
F084742	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_100006431	F043093	N/A	MNIYLDQKWNRIGISLSGGADSALLAYLICKNVSTTTDIHITNQIRMWKTRPWQGYVADGVINWLKQEFNNKFYIHKNLIPPELEEPTDYFIKDEYGKMKSGNRIILRSHNEYIAHQYNLDALYGGVNMNPDIDIPGQLDERNEGTLVPHFVHNGVDICHPF
Ga0075441_1000064313	F084742	AGAAG	VPKNKLPPEVIKHWPEIFGDVEIKAVPIEYIHNIHVHFHDGKIWEIDLDKQASVGDGDVNIIENSLETFLEKYHDDISHVDFRLNTSKVVEDVKKRTKSFMKKRK*
Ga0075441_100006439	F029568	N/A	MGYRYDLTNTHVEIYYKSTPEFEKARNLCLKEENWLRNNYTKDNLKVEEHTGYGVLYQTSTGKPMVMGGVFNDSRYPPNVAKQINRLYTFPDFRMTATDMTDGFRCTCKLIDALEEVNTYEVYLITMQNRPARPNRGFWKVWCKHMDIASEGAWALGTNGYIQTCPWPVQKCWQNFVWKETKQGAFDNWAPETITHAEWSELEEGK*