Scaffold Ga0070715_10063538

Overview

Basic Information

• Taxon OID: 3300006163
• Scaffold ID: Ga0070715_10063538
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1628
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003485	Metagenome / Metatranscriptome	484	Y
F014083	Metagenome	266	Y
F047952	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070715_100635382	F047952	GAG	MTWGSLRIEIRDDEIIVTQPGSNFSAVYYKPRDEPQLIAKGTPSGNYRFLARAWKAANDKARELGWIV*
Ga0070715_100635384	F003485	AGCAG	MAADMSVEVQGDDIVVTLPGTSYVVTYYRAAAFPQQLLTKSHSGREDEGAPMTQAEFHARAWKAARHKARALG*
Ga0070715_100635385	F014083	N/A	MQDLHIEVRDQDIVVTMPSTNLRAVYRKPHRGSQLVARLDYFQDQQKGPITRAEFLTRAVKAANDKARELGWIV*