Scaffold Ga0075030_100000275

Overview

Basic Information

• Taxon OID: 3300006162
• Scaffold ID: Ga0075030_100000275
• Source Dataset Name: Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43402
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (80.26%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011059	Metagenome	295	Y
F041563	Metagenome	159	Y
F051645	Metagenome	143	Y
F054521	Metagenome	139	Y
F066497	Metagenome	126	N
F078138	Metagenome	116	N
F083609	Metagenome / Metatranscriptome	112	N
F096494	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075030_10000027517	F041563	AGGA	MKITVKIIKENEDGSANAQVDFDKEGLETLVQWGLVSILTKAIDEYKVRDDEADVVIEPEFPVKKKKK*
Ga0075030_10000027524	F078138	GGAG	MSLSPMIPAMRNAHASHVDFGFLRGFIPSNPNFMPSNIDMVLERRGVFLFGEWKREDEDMKQGQKMLLTALAWHHTVIIITGYVDDKPHIGLIQKVTPTGNLTLVGEGEEDLINFLTGWYVEVERGIL*
Ga0075030_10000027528	F096494	GAGG	MMNAKELADFLESNMTPTLAIAGDITCDAIVKVLRKQHEDLEYMQGQFERAIDFLAKCNGWSKTK*
Ga0075030_10000027539	F051645	AGGAG	MSQDRFYEPLLYVVKKHGSLNASAKALGISQQRIFHWNKAKVIPDEWKIILHKKYAVPYKKFFEQLE*
Ga0075030_10000027545	F054521	AGG	MSEKEPTPIKDFPMESAMMSDMVALSVIEAMVSSDLGKSLEHPMQQMTAIGFAFAKEFLKQREEWLKPKEEAPAASPIITS*
Ga0075030_10000027554	F011059	GAG	MTYEEWQNKFLMEEGSTYDREFRYQFLSDYLLNPNMVKICEKHNVPYATATSWKSKNWWHDFCEEILLNHKEELLARQRKIIEKTYESIEERLENGDESYIPNEGHVRTKVKANHLATIADVTLKANQLLQGKATQISHVTIESLADKLRTITQDAIDITPESQTIQQVKQIPQD*
Ga0075030_10000027562	F066497	GAGG	MTQQEWQEWLHHHVTEEFFNFLKKAKAETQEAWANRQFVTEGENQFALGGVYSINQILDLTYEDITGV*
Ga0075030_10000027569	F083609	AGGCGG	MPQSITPLQILNDGYRNATLKIDGYVNAVDYTNYTVLDPSTLSQIDAQGTIPSKVRIKRINFDIQDGIQVDLIWDGATPTSLWRLTGRGEIKAGPFGGITDNAVTPTGKILLSTIGGATTSSNTSFTIILEIIKD*