Scaffold Ga0007825_1124367

Overview

Basic Information

• Taxon OID: 3300006125
• Scaffold ID: Ga0007825_1124367
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 512
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Actinopterygii → Actinopteri → Neopterygii → Teleostei → Osteoglossocephalai → Clupeocephala → Otomorpha → Ostariophysi → Otophysi → Cypriniphysae → Cypriniformes → Cyprinoidei → Danionidae → Danioninae → Danio → Danio rerio (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000350	Metagenome	1248	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007825_11243671	F000350	N/A	LTVTPVDEAGNTCLIVVVVFYTKYVWATPAKEYTAHTVATALFTFFCTFGVYDELWSDPGSDLMAEVVQQLSEWMGIRRVISLVDRHESNGVEGTNKQILRHLRTLVHDLRAPKKWSDPTILSLVLFAINDGVNSETGVRPLDAMFGSADGPYFRLPDSVDPSSITSAWV