NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007816_1040750

Scaffold Ga0007816_1040750


Overview

Basic Information
Taxon OID3300006115 Open in IMG/M
Scaffold IDGa0007816_1040750 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1057
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007918Metagenome / Metatranscriptome342Y
F010534Metagenome / Metatranscriptome302N
F036561Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0007816_10407501F010534AGAAGGMSDRIGEKQETIMNLIDLEIKKALKDQASRLEILQDRIKDAIDVGTTEHSQGIKQIMLFVTKAHVQAWIASLKHKVDTAGDCEICDLEKILGEESLEIAEAVKIALSNRNEETRSR
Ga0007816_10407502F007918AGAAGMCDTTLEKSDPFLNLEPDIEAGIKQELLSILTNVETLTEAMNRVILKEEGRREQFKILCSSIDYLFGENIGMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVATKPDLESMKTEMRRVLSQQRIERLQTNPQQEEQRPQKG*
Ga0007816_10407503F036561N/AMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQSTAVAEKKVDLPESLEVL*
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