NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007858_1132287

Scaffold Ga0007858_1132287


Overview

Basic Information
Taxon OID3300006113 Open in IMG/M
Scaffold IDGa0007858_1132287 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061525Metagenome / Metatranscriptome131N
F067399Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0007858_11322871F067399N/AVVSVGNFVVGFDVERMIVDVIHTDGDFGVGTLRIDVAVSQGGERDVVRPEVGYVVVHGGARGVGVTKSTVFVELLN
Ga0007858_11322872F061525N/ASLRNPILLLLAPVTSMSFGPSELELASRSALVSLDEKSPSEPSSLLFVADLVVWASHGPFVASMEPEDVDGDAPLVCASGFCILL*

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