Scaffold Ga0007871_1036052

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007871_1036052

Scaffold Ga0007871_1036052

Overview

Basic Information
Taxon OID	3300006110 Open in IMG/M
Scaffold ID	Ga0007871_1036052 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	948
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007871_10360523	F055421	N/A	MEEFTNPYKETNIETHLVWITIATTANYIPMEGIIGKCIRSYLALVVWLLIILNRKRGLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLIKLTIGY*
Ga0007871_10360524	F054566	AGG	MEEEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIG

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