Scaffold Ga0007836_1029884

Overview

Basic Information

• Taxon OID: 3300006107
• Scaffold ID: Ga0007836_1029884
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Oct07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1206
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis benzoatilytica (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088131	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007836_10298843	F088131	GAGG	MSIVAPFVYSGGMVEPYVSLNEVKFSPTASAIDFTNLIEDASQAVQDRALYELIVSASSKADNYTMGVYGSLCATSNTENGRYYMNRMGQIVINPYFTPILAVQSFSAGWGPGDGLQNIQLSTSNCSIERTQFIITSQSTMGLYFGNLGIVGGNMQSGTEIFCQWTYINGWANTFTNTSSVAGATSMTVNNVMGIFPGQNLTIWDGQKDEY