NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082037_1003363

Scaffold Ga0082037_1003363


Overview

Basic Information
Taxon OID3300006094 Open in IMG/M
Scaffold IDGa0082037_1003363 Open in IMG/M
Source Dataset NamePetroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA- 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4916
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Petroleum Reservoir → Petroleum Reservoir Microbial Communities From Reconcavo Basin, Brazil, Analyzing Oil Degradation

Source Dataset Sampling Location
Location NameBrazil: State of Bahia
CoordinatesLat. (o)-12.2Long. (o)-38.11Alt. (m)Depth (m)500 to 1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025288Metagenome / Metatranscriptome202N
F031475Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0082037_10033636F031475GGAMDANTSDGSRDPLCANPQQQREKLTQLDFLTLEAMGTSLEELRELLDEEELQAYFAFLRRHSSDLDSISP*
Ga0082037_10033637F025288AGGAMKNKWIWITLSVILLLGLIAGAGALGYLMGLRNANALALQGDDNTPSPRQQIPGMRDGLIIRRPAAFIGYFFLFPLRLLLGLAVLLLVVWLVVKVAKAAWDGGNHKAKSTEATVSSAGTETIVTEAPASPSEPTNTVGSDQQ*

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