Scaffold Ga0082021_1026893

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082021_1026893

Scaffold Ga0082021_1026893

Overview

Basic Information
Taxon OID	3300006092 Open in IMG/M
Scaffold ID	Ga0082021_1026893 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Nanyang Technological University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8201
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater Treatment Plant → Activated Sludge Microbial Communities From Wastewater Treatment Plant In Ulu Pandan, Singapore

Source Dataset Sampling Location
Location Name	Ulu Pandan, Singapore
Coordinates	Lat. (^o)	1.3315	Long. (^o)	103.7543	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036770	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082021_10268939	F036770	GAGG	MDVPPGVPGAAGKRSRFGAAAEGWEGYNSWLDRVRQQPGATSRQAVISKALYSVSSYKNWADKAKGAFDKPK*

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