Scaffold Ga0082018_1039507

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082018_1039507

Scaffold Ga0082018_1039507

Overview

Basic Information
Taxon OID	3300006091 Open in IMG/M
Scaffold ID	Ga0082018_1039507 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Major University, Chile
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	855
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location
Location Name	Eastern Topical South Pacific
Coordinates	Lat. (^o)	-13.71	Long. (^o)	-81.389	Alt. (m)		Depth (m)	405
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027540	Metagenome / Metatranscriptome	194	Y
F030781	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0082018_10395071	F027540	GAGG	MSSFKPALIKPTYDVANFGEDLSLPLNCLSGSTATLTPSTATFVQVLEDGRVPIDSVPEFITDSDKMAMITAGDDTDFDTTWQFEPDMSAQAYTISFNFAVGMKVSAYTSGNFKISDVQIVCKQIGGGEGDFTYVNKIIDPGMTNMAGVAEQVAIINFSTTVSAKVFDKPITFQIKVNTDNATGTYQT
Ga0082018_10395072	F030781	N/A	FTAVYTVSQSLTGYGEFSSNDFGNSLPLKVPMQPGCASLGATGTQGILALASYHNTHMPMKTSCKINTSFTNDITQTGTTSFIMGVGYTKQ*

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