Scaffold Ga0082018_1025056

Overview

Basic Information

• Taxon OID: 3300006091
• Scaffold ID: Ga0082018_1025056
• Source Dataset Name: Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Major University, Chile
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 1082
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location

• Location Name: Eastern Topical South Pacific
• Coordinates
  • Lat. (^o): -13.71
  • Long. (^o): -81.389
  • Depth (m): 405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F034953	Metagenome / Metatranscriptome	173	N
F046426	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082018_10250561	F034953	N/A	CYSYSFRSCCCLVRFNNKMKQMKLSQLLLLIKKVEKDTPVIITWKDAVDYSDEVTIDTLKIKEVYYDTIGFFLSFKDDYVILAYNKEDDNKTYKGTAMIPCSLITDIRRLTDGYDE*
Ga0082018_10250563	F002078	AGGA	MEMFMNQGWFQMAGEIVLMFTVITGALPDRWVQKVPILGTMWPMFNWLAGNIFNNINHPKGMAARVEVEKEIDEAKAKVRDRVGMPDVLDGM*
Ga0082018_10250564	F046426	GGAG	MKLRLKLGIVLVCLTFWTGCSILPELVAPAANFAIGFYDHDDYYSKECLWYDEVKLNEKTKKWLMESNPPEVVSKDLAVVSRNNDIYKEVCER