Scaffold Ga0082015_1031617

Overview

Basic Information

• Taxon OID: 3300006090
• Scaffold ID: Ga0082015_1031617
• Source Dataset Name: Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP124
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Major University, Chile
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 871
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location

• Location Name: Eastern Topical South Pacific
• Coordinates
  • Lat. (^o): -13.71
  • Long. (^o): -81.389
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029130	Metagenome	189	Y
F054108	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082015_10316172	F029130	GAG	MTDKPNFVIVNSSEIAKDPTHRLDPKYWIRRKRHNAENLILAKMIAKHLIMHRIWNGLSQKKIAVEDLQVTHQQYQKIEAVSNDVFYVQVARIFKNRGWNKEVLEADPYAVLEEWLKRDYGNLESKVLPDKYHKIINAWKLLDLKAEKNYYKK*
Ga0082015_10316173	F054108	N/A	MKKKIMLFAHLVTEIDISKYKQKEYIKIVKAIYWEIFGSKK*