Scaffold Ga0081761_1280700

Overview

Basic Information

• Taxon OID: 3300006082
• Scaffold ID: Ga0081761_1280700
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1172
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.933231
  • Long. (^o): -130.013645
  • Depth (m): 1542

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030785	Metagenome / Metatranscriptome	184	Y
F033080	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081761_12807003	F030785	GAGG	MRTATVEILEKGEKVLGSRTSGEYMVRRFEDGVEMGGEFHYTMTEAGAAVRKWEKFGIKEE*
Ga0081761_12807005	F033080	GGAGG	MENKRRVRGRRVTYMWSEAVVDNIARKVAEEPMEDELDKWMVGKSEHGHMPLVKKPQHVIDEEKADVARERERERIQMEMYDDPYLNWSGHR*