NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007881_1026770

Scaffold Ga0007881_1026770


Overview

Basic Information
Taxon OID3300006072 Open in IMG/M
Scaffold IDGa0007881_1026770 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1573
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022147Metagenome / Metatranscriptome215N
F024477Metagenome / Metatranscriptome205Y
F037570Metagenome / Metatranscriptome167N
F039941Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0007881_10267701F022147N/AKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKPEVNLEMKQILAKSARVISELQHYTEEAYNVSQYILIHYFKIDDLIKAESYPLQEVITFQDKKCKILKSKDIVTLEKVSIANKLLIKTLSEETRNVLKEQLTLVSKVGSTFTNLSLMYTYIEENDSALQSETKK*
Ga0007881_10267702F037570AGTAGMNIKKLDLLKIRNLKFRASQRQVIINRLLKKKDLEKDLWKVSVKTLIILAKIKVRCEELERISENLQQTIINGY*
Ga0007881_10267703F039941N/AMDIETLALRLEEVRLSRLEVLEEKKVLAGELLAGSLRIELKRSIMENISLLIQLDLTLNEAEILYESLIECRLLHARFKQQSS*
Ga0007881_10267705F024477N/AVSYDIIKNSSKASSFELLIKNITLIEKVEDFYKELDQITSYRFNCHGKPDPDIYFMKDIIKIRLMELERLQMQKINELIENDLNEGL*
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