Scaffold Ga0007876_1038319

Overview

Basic Information

• Taxon OID: 3300006071
• Scaffold ID: Ga0007876_1038319
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1315
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021920	Metagenome / Metatranscriptome	216	Y
F038982	Metagenome	164	Y
F079586	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007876_10383192	F038982	AGGA	MSKLSDTLKRALEKKQGIHHPEADDAPAVEKKTKRSAAPVVGKKPPTRSAGRGR*
Ga0007876_10383195	F021920	AGG	MAKAQQTASELSRTLAGQWTKSQKREHASRSIMNSNQRIKAINKAFKQNQLLNK*
Ga0007876_10383196	F079586	AGGAG	MKRIESRSGQIDTEVCVDQCGGRYDLVIAGAQRLREMKRRARENNTHVTAIDALLEVQSGNLNVVDYMIKVK*