Scaffold Ga0075017_100585980

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0075017_100585980

Scaffold Ga0075017_100585980

Overview

Basic Information
Taxon OID	3300006059 Open in IMG/M
Scaffold ID	Ga0075017_100585980 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	852
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	Pennsylvania, USA
Coordinates	Lat. (^o)	41.1752	Long. (^o)	-78.4168	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075017_1005859802	F013913	GGAGG	MNLTPSTKGSFIAGVGLWCLIWAALFKADEIAEAGGFQRWVSSEKCLSWIRQHKSTSLISTEILNYSHTGLDPLGVTFALGGTLTNVLVIYVLLPLLDKAKRGGKALNLQL*
Ga0075017_1005859803	F025336	GGAGG	MALIALIAAAEAMLYSASRSKRGQTRRQQVLTGNSLDSARALPLVDEYLKRKTAGANRLQAFVASRLAEVCRRVVHTRSFEYLLLHVIRTAVLKRRSKLLNTQGRVL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.