Scaffold Ga0075017_100053232

Overview

Basic Information

• Taxon OID: 3300006059
• Scaffold ID: Ga0075017_100053232
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2725
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1752
  • Long. (^o): -78.4168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F036885	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075017_1000532322	F006278	GAGG	MCRAEIQWLASGPTLKFEGRLVADWAEQARSLVTKNVLPKGLIVDLTEVSYIDSAGEQLLKWLASAGAVFIAGSVYAFTVCDRLRLPPMQEITERSKRRHGSSGEKSAIKYSHPVEAI*
Ga0075017_1000532323	F001596	AGGAG	MSWFHSSMAPVDARNHASPAEVVACFQDQTNLLGRLAFLITSDHAKATLAVAQACEVTLQGNRPFRDWLFEWAKAATIARAISHGTEAIRICEATYKDQRCLHVEHLSQGDTEERAASLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRTAVLAANCHALTWLQKRQEKPAEENLILARIS*
Ga0075017_1000532325	F036885	GGGGG	MADKKDRERVIAEITLSHLMRLGNEQGYPVSREQALAFLNQEGRAFEMWKYMMQAAEEFIAGSLFQHSFVSGGHNGFASRPRPMRSVSNAPL*