Scaffold Ga0075017_100037925

Overview

Basic Information

• Taxon OID: 3300006059
• Scaffold ID: Ga0075017_100037925
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3198
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1752
  • Long. (^o): -78.4168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075017_1000379252	F014639	AGGAG	MSEITQTNDNPVSDEIGFLNRKWKLILFFFAKRAFESRLEGVLRSAAGHEGNSLPPGNSQYQLLSAEANSLCSGFADRWGLDIGLLKAKIPGLAKLAGLSTPPPTKNCARLACFAMVAIPVLCFLMGAVAGLISLGFHLVGGR*
Ga0075017_1000379253	F025336	GGAGG	MAIIALIAAAEAMLFSVSGATRNQARRQQVLMSNSVNSIRGLPLVDEYLKRKTAGANRVQTFVASKLAELCRRVVHTRSFEYLVLQLIRTAFKRRSKFLNIQRRVTICK*
Ga0075017_1000379254	F013913	AGGAGG	MQVTPSMRGSFLAGIGLWVLVWAMLFKGDEIAKAGGFERWVSSERCLRWIRQHKSTSLIGTELCNYAHTGLDPLGVSFALGGTFTNLFVIYILIPLLDRAKRGGKALNLQF*
Ga0075017_1000379255	F020887	GGAGG	MRTKITLYGEIAGNIWMPAVECTKAFHLELTRIPRNSTTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCAITWAMLEVSHYFGDETDGTRTVKIRIRVWELRGQGQDADCFAEVRS*