Scaffold Ga0075417_10018728

Overview

Basic Information

• Taxon OID: 3300006049
• Scaffold ID: Ga0075417_10018728
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2727
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002477	Metagenome / Metatranscriptome	555	Y
F011858	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075417_100187283	F011858	AGGAGG	MAFVFHIHTSPSCETTHSTSCASVDGSNWDHSCFQIASGRNRGKFGCVHRNPEGLSHEEEIFISDLISLKVFARDQGGYRKENRA*
Ga0075417_100187287	F002477	N/A	GKKLSHAKLVKAYDPTMAPILKGKSHCPAQFGRKPGIAAKPATGFIFATLVPQGHPSDPSYGLPWLDRVQNAIDRVRTGPRRQIHSVASDLGRNDPCLRQALHARGILTVGIPKMVAPIAPNPSAQDVHTILQEAGLHRKRTPYQVHLACASGYSRPVVESHIASLRSRGAGHVRYKGLAGAVRQQGMTVMAHNGAVIVHIRQQQLSKRGQKFRRLLGLKPPKRNEIKYPKN*