Scaffold Ga0075417_10001491

Overview

Basic Information

• Taxon OID: 3300006049
• Scaffold ID: Ga0075417_10001491
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6505
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001736	Metagenome / Metatranscriptome	644	Y
F021628	Metagenome / Metatranscriptome	218	Y
F065930	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075417_1000149112	F021628	N/A	MLGRAAPLVIAFSLIAPAVQASPECLTKQEARAKWPTKPIYSHGSSRCWNDQPLSSRRSTTPPANISDSASKAHALDLSAPRPQAAKTEVFLPSITVNDIDLLNGAPMTGWRVLIGINDLVGINGQAPDPNNGVDGCCWPSLDAVKALIDGEK*
Ga0075417_100014918	F065930	GGAG	MRMPILSYFLVIGTVLFGGLVLISTQLESKPLPVSQRIGVPPPFKAAPDDLPTPTWLERNQTF*
Ga0075417_100014919	F001736	AGG	MGYNARNDEIRDNVTRMQREWEAQRGALATVRRFNATLSAKGYSWFWPKIAAALTSKHHWLIIACDSCGTVVDLDLHVKPRDPEASVRVALRDVRCPRCNGHGRPRIIALARHPSFEMTICVNF*