NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066652_100030765

Scaffold Ga0066652_100030765


Overview

Basic Information
Taxon OID3300006046 Open in IMG/M
Scaffold IDGa0066652_100030765 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3841
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012128Metagenome / Metatranscriptome283Y
F020185Metagenome / Metatranscriptome225Y
F070168Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0066652_1000307651F070168N/APAGGPLLLRGYGAEELLSRARVIGRVELRDDYWTGLDWNLLHFTTVRGIAGTVFADAAAIATCDSYALGRDRVYFDAGYSFRVLHDAFGIHQQLLSIDFAVPLNRHDPYATCLDIPRAASSRPPFVVLVSFFPSF*
Ga0066652_1000307653F012128GAGMKTLRHPPSKELWKFCMERLRELRGPDTRERDLANILGFEHSRAVRWKEGQMYVDRAEYLVRLADALDVEPMLLVAMASGTLTVEQAHRQIAGAGKGDDGKRRRGNGGRPEPIEVASDATLFALDAGKFDSGRGVVLLISSNGEGRVELSEALGQHADVGGMVAGTLSMGLCLAERYRPELVFIDLGVANVQAFDACHVLSSLSTKAQRRCRVIAGTATVTDSVEKPALMAGAANVTLFPFTLGLFESELGRLEERLGPRKTLRRA*
Ga0066652_1000307654F020185N/AMARARRSGGLWIGLIIVTTVACSIAIRRDLSTVPPGQVGFDDMCGLQEYFDALEIKTSPPPRVVSALDLEGRQGGKPVTGGAERFAFENDFQLKHLRRILSENWRRLPDSVATAPKIEIEVKWSERAGAKRVVTEEDAELIIGDQTFGLPYHPCLSELLYGEALYRQRRTMWQLPLPGVPAARSPVTDGGAGSPDGAADGHRT
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