Scaffold Ga0075365_10097419

Overview

Basic Information

• Taxon OID: 3300006038
• Scaffold ID: Ga0075365_10097419
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2011
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058289	Metagenome / Metatranscriptome	135	N
F067783	Metagenome / Metatranscriptome	125	N
F079018	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075365_100974193	F058289	N/A	MPSVAYLRRQADICLRLAAIASDDAASSRLLAIHQDYTAKADALEAAGEAPMAQPDAAPGTEKHGSGAGS*
Ga0075365_100974194	F067783	GGAGG	MSRIDPWEKAADCERALQAAADPQQKTILKNLRYLWIALANESDCMSADEFARESETIGRLHIALARSRARSLH*
Ga0075365_100974195	F079018	GGAG	MPITRYLESDKFDSEAKRVMGIAFEMARVALRLSDRTDVANEIVASGIIQLAKGGERDADALCEGALTFFREQQGQGDDHVPPLPESD*