Scaffold Ga0075470_10008267

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10008267
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3209
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_100082671	F039000	AGGA	MTNQSDNSDKKVERIMDDAQTLLIFCETAFPKPSQAWFACLVSSAILTAELEVPLEKFLEGFEHAYNDAMSAKFNDAMGGKSYDH*
Ga0075470_100082672	F031377	GGAGG	MITNAHDFIPVTRIDNRLTPFNTGKVQIGLLYQPKPPEMTSSEELIQAALLGKPTMYRQPSMWPVILGSAILAILLIFLVG*
Ga0075470_100082673	F028744	GGTGG	MQHLHEFLYDCDELGLQLKCFFEYEPAEVGSIEPMSGMKLEPDYPEVWTLISVFLPKSDVDLSGVLHPDVISQIERDAAVYFEEMREEKYYD*