NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075470_10000341

Scaffold Ga0075470_10000341


Overview

Basic Information
Taxon OID3300006030 Open in IMG/M
Scaffold IDGa0075470_10000341 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15547
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (74.36%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F005092Metagenome / Metatranscriptome412Y
F017484Metagenome / Metatranscriptome240Y
F026861Metagenome / Metatranscriptome196Y
F029721Metagenome / Metatranscriptome187Y
F081257Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0075470_1000034110F026861AGGAMKLDEFKALIETQRKAQKLTNLEKIAKIVKTKEKENN*
Ga0075470_1000034113F017484AGGMSIEIFEMNKSGAGWVSLENASADTKLDLELAILTKAEMKMLCFKCHVEIPRGNVCVNHKNVKGAIYFE*
Ga0075470_1000034116F081257AGGAMKTLSYTAEKGDTLVSVSNRLMVSEYQINNLLDSLVSNGYTILTTEVGDGDYSPHWQG*
Ga0075470_100003414F000808GAGGMEYTYALTTSYDGELVNTMRVSDMLTAVDAWEKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVVIR*
Ga0075470_100003416F005092AGGAMDKLEYALRTIQNCNLCNGKGVDYFGNGDAYDFEDCICNPYGLILDEDGSVIFDNGLLSEPELFATMEAN*
Ga0075470_100003417F029721AGGAMRSYSIEDLLVGQYYRPTSYARKFQGGEINFAEKRDDVWVGTDYQAYSIRFNGSKWATIAVRVSDL*
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