Basic Information | |
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Taxon OID | 3300006030 Open in IMG/M |
Scaffold ID | Ga0075470_10000249 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18288 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (43.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F029735 | Metagenome | 187 | Y |
F034160 | Metagenome / Metatranscriptome | 175 | Y |
F087065 | Metagenome | 110 | Y |
F095396 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075470_1000024910 | F029735 | N/A | MAKDHRLALDRYIDYTKDPFVKKRKLNFDDSFASKASTGAAPWMPSRFEQSDLLRRIQTRKLSLNPSLNFVGDLPEQYEVFANIGRFVRNESYDFNEGRPLTPLRPEEQPGYSPIWMDAYRISPTMNPDKKTTNPMPRVANPDPRGYMMAAAEKRALNETEDNRSVAQLLENKNNTDKTLTKEETNKKGEPIKNPESA* |
Ga0075470_100002496 | F087065 | N/A | MQAQKTKRWQYDWRRKVGERPTSENAELFHQYVEYAYQAIEEFQHAAFPYSDVRQVCQPQYLFQVVSDMRSDKLSMRIYQNEEGLKLVVIHSVG* |
Ga0075470_100002497 | F095396 | AGG | MNPKNRAERVIAIDAIANEAQKMAESGADALDVQKFTIGARKELAKQRPDVENYFDAAVAAKKAKDKS* |
Ga0075470_100002499 | F034160 | GGA | MDMKEGAFTAKAKRKGITSAQLQENVLANPDEYDEKTVKQANLRKTLVGLHKKKKSNK* |
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