Scaffold Ga0075470_10000249

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10000249
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18288
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (43.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029735	Metagenome	187	Y
F034160	Metagenome / Metatranscriptome	175	Y
F087065	Metagenome	110	Y
F095396	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000024910	F029735	N/A	MAKDHRLALDRYIDYTKDPFVKKRKLNFDDSFASKASTGAAPWMPSRFEQSDLLRRIQTRKLSLNPSLNFVGDLPEQYEVFANIGRFVRNESYDFNEGRPLTPLRPEEQPGYSPIWMDAYRISPTMNPDKKTTNPMPRVANPDPRGYMMAAAEKRALNETEDNRSVAQLLENKNNTDKTLTKEETNKKGEPIKNPESA*
Ga0075470_100002496	F087065	N/A	MQAQKTKRWQYDWRRKVGERPTSENAELFHQYVEYAYQAIEEFQHAAFPYSDVRQVCQPQYLFQVVSDMRSDKLSMRIYQNEEGLKLVVIHSVG*
Ga0075470_100002497	F095396	AGG	MNPKNRAERVIAIDAIANEAQKMAESGADALDVQKFTIGARKELAKQRPDVENYFDAAVAAKKAKDKS*
Ga0075470_100002499	F034160	GGA	MDMKEGAFTAKAKRKGITSAQLQENVLANPDEYDEKTVKQANLRKTLVGLHKKKKSNK*