Scaffold Ga0075470_10000180

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10000180
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22232
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (51.28%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004049	Metagenome / Metatranscriptome	455	Y
F007260	Metagenome / Metatranscriptome	354	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000018011	F018171	N/A	MANTQGKKYIFGSPATLAIYDAAGNPVVSGYVSPDIESYDITHDCDTEEVRNSSGEVVGHITYNNRITLTVNFVPADATTVDNAKLAAAIADGNGTATLTGAPVIEVGGFTDALNAPGAGSPSPGGRWIYAGGGSIKTTNTGKATGTITLKRYAGISATGAATNL*
Ga0075470_1000018022	F013412	GGAGG	MRHLWARGFGKLYRDAEVITTDDGRRFLLAVIEFDQRTLGNGKPYAQRVQFRSFDNEDIEIADQLLAGTYVMFDGDCDAVADKSQTGWWYANPRVTGRINEIHHAS*
Ga0075470_1000018029	F004049	GAG	MEQGEGEEAVNNPIDPAAFVFKHKRTGQVVVAPSERWHEYYDNKENWEHTASINACLAIQYILSVKPRERNRYLRSLTEKK*
Ga0075470_100001806	F017997	GGA	VNIIEQIVTALLKWLTGLAKTPPTVEDAKQDPELKKKLLDRIDRAGG*
Ga0075470_100001808	F007260	N/A	VNLIATSLQLGMTVLQGAMGNPSFIWQGSLVRCIPAAITDANAVINGGFNDNVQVRLLVKLADWRLADSTLVTVDATVWSADVGSTADRLLQESGSLILQENTDAIQLTFGKMIPVVGRTVTYDGRSLRILSAKRDGTGAYYVLELGAKTK*
Ga0075470_100001809	F013879	GGGGG	MRPTITVDTSRFDAAWREYLPKTRRSLADAINSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPVGAARFDKKTGKKVGRSRQLRLVHLIAQAKNAKAGNEGLYGEDMRKAAAKLRRRAAGSVGYLKSAVVKAIRRLQPTFRQFGGTVRAKKGSAQVRTVSGNQALINLANQYGLPQENVSVHRGSSAYGYNATAGLNPHSSVRLNIGLANDQMGAVESIYSKAMQQAYNDEAKALEDHITAKLQEDGESLESKGVTIK*