Scaffold Ga0075470_10000116

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10000116
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28315
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003471	Metagenome / Metatranscriptome	485	Y
F041722	Metagenome / Metatranscriptome	159	Y
F046330	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000011625	F003471	AGG	MAEYNQPKPAHNPLGNNGYPNNVANTQTVKTRGTGAATKGTHSSKKLG*
Ga0075470_1000011626	F046330	GGAG	MAKGGKTNEQMLKLGRNLAKVANQKREVRKVQKDMGKVNKNG*
Ga0075470_1000011635	F041722	AGGAG	MAMQTDVKSTKPLAATGPFKTQADNDIGFRTRIKAIYAACGTSAGSVVITDGQSGSTLFTMATPTAASTGSVYILLPDQGILAETGLYGTVTNTASVTIFYG*