Scaffold Ga0075470_10000018

Overview

Basic Information

• Taxon OID: 3300006030
• Scaffold ID: Ga0075470_10000018
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62866
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (93.98%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007521	Metagenome / Metatranscriptome	349	Y
F033781	Metagenome / Metatranscriptome	176	Y
F100657	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_100000182	F033781	AGGGGG	MSFSNIQSVTKTADASAVVGRTRVVGVYFTCTNTAASFVLKDGTTSAGTGKMTVTTPAAAGAYDIIIPDMGILFEDGVFIDVSSVEVTSVTLLFEGGAAA*
Ga0075470_1000001867	F100657	AGGAG	MQIRYTTSVFTPAGWRSETVTAQAEAISPKRLRVVSVLDVGGNGTTGYGSRTGAKRQTYHVGGIALREVGAVKLLNKVEVVQ*
Ga0075470_100000187	F007521	GAGG	MAGRGMGAATKGGGCVESGPKNRMVSETSRKTGPVMMKKGGMAINQHKKMAMGMMGGGMAKKYRKGGMACD*