Scaffold Ga0070717_10006077

Overview

Basic Information

• Taxon OID: 3300006028
• Scaffold ID: Ga0070717_10006077
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8858
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070717_100060777	F003337	N/A	MSVSAIRNFVCWMMVVLCPVSLIAADTGSALLRSEGGVWVNGLEVAASTVVFPGDLLETKPGFVANLDAEGSSVLIQPESVVKFQGTFLVLEHGSVSVGTSTSMSVVVDCIKVEPVSKERTQYEVTDFNGTVQVAARKSDVNIIQGGALQKASKESTPPQSATVHEGEQATRDEAAVCGAPLRPGAAASGMNTKWLEIGAGAGGGVLLLCLLLCKGKKTTNVSPAQP*
Ga0070717_100060779	F002101	AGGAG	VTIPALALPLSTTERIPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINVAGEIDSRDKFCTDLRSATPPQRIAFFVGGPEYLAAAPHYDEAPAGPDADALHREMVAALLAQTSGGLSQRWGILEACRKISSVRAISEARSRAIRETPRPSRWAETIEQYSAPEPASPQPMLSPETDATQTEREELL*