Scaffold Ga0075462_10000013

Overview

Basic Information

• Taxon OID: 3300006027
• Scaffold ID: Ga0075462_10000013
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46237
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (92.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F019646	Metagenome	228	Y
F040582	Metagenome	161	Y
F053980	Metagenome	140	Y
F076077	Metagenome	118	N
F103053	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075462_1000001310	F053980	GGAG	MNGYQLLAQFEKQIKECFTVPNHWLPLDFQDHRTDCVSLADVERKCDERDRCTMSSFEEESIERAKRVQIYRDQIDKGEKISYLPQ*
Ga0075462_1000001314	F040582	GGAG	MGLIELDFQSIVIGYMVGVALMWSICETFYGENNEKRAETDSKNTRPRYDRRYHMLYGDPPE*
Ga0075462_1000001316	F103053	GGAGG	MNEYIERNLYEELDRFDTPKLQVYLLTCQENKFNDEVRVAANILLVRFRNGE*
Ga0075462_1000001320	F019646	N/A	MSNNFEITYHSDCCGSYVHSDAQICPDCLEHCEVIEERVDYDDSEAVHFEASLDFYGAA*
Ga0075462_100000134	F000325	AGGAG	MKTAKGNDKLGKENCIVVSRPVGDTCPPTCEFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLINAEKKGNDLRWHERGDFYKNGSELDIEYVDNILWACRSILAEGGKLPKMWAYTHIYDPKLSRILGKYITMYASVHNHDDVAKAKAAGFELFAWCDSDEKIATKRPRGKKKADQWRSDLPKLVVLGDDKYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH*
Ga0075462_100000139	F076077	N/A	MDDILYSREKEIIMFTEQEKLEITIDGLRNGDIFMNEDGIPVDECGDPIFEDDQ*