Basic Information | |
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Taxon OID | 3300006026 Open in IMG/M |
Scaffold ID | Ga0075478_10007398 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3805 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006684 | Metagenome | 367 | Y |
F009110 | Metagenome | 323 | N |
F044196 | Metagenome | 155 | N |
F080621 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0075478_1000739810 | F044196 | N/A | MEDITDKLENAKILINQMIGSHQGTPEAATRYAIDQLGLPPDVASSLIQYANQVNKQ* |
Ga0075478_1000739812 | F009110 | AGAAG | MIASAVRYMESIKDKVPPAGEDDIIVKPGTTHMRTLGIDPHEAVKAVDKLKATGLMVKDACEQVGMTRSQYYKTKKGITNRK* |
Ga0075478_100073988 | F080621 | N/A | MKNINETIASLSIDIACLLDEPSEVTKDDLLKIQDLVTKLENDTNTP* |
Ga0075478_100073989 | F006684 | N/A | MYKIIISYIIASALALGLLNHAVNKAQDNIETLAEVLVHHADTLDDHRGVLLQMIDDLTIKPM* |
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