Scaffold Ga0075474_10043209

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10043209
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1544
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015946	Metagenome	251	Y
F022525	Metagenome	214	Y
F027349	Metagenome	195	N
F029563	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_100432092	F022525	AGG	MKIEDLKIKVKPKYYFGYLQGYTVSINGKKFPTKRNYVYAHNEDNKAIKTALIDGNYHNDDELVASTLKKEMKERGLI*
Ga0075474_100432093	F015946	GAGG	MKKQFKIVDWMNNRIFPDKAFSSFEHGWEYIYSKFDNEEDHQEYFVVDINEKESGQI*
Ga0075474_100432095	F029563	GGCGG	MKTYVIDFVEEVTSQVKIQAKNLKEAEKIVSSGDFMGDEVIERDHFQITGSYEEGEE*
Ga0075474_100432097	F027349	GAGG	MKVWNIRVTDRNGFDSYSFFQEDEPTNQQLEAIRKIYQKSGRYIPEDIEDIDVEIKGSFDNQNIPTYEQLLNDLENKYGKVSK*