Scaffold Ga0075474_10009699

Overview

Basic Information

• Taxon OID: 3300006025
• Scaffold ID: Ga0075474_10009699
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3705
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013880	Metagenome	267	N
F016522	Metagenome	246	N
F034164	Metagenome	175	Y
F095405	Metagenome	105	N
F099216	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_100096992	F095405	GGAGG	MGGNCQDMGFPVCPRCRCGLLQSADSEISEWGTVVHCEECGFGSMVYLRPGGSYSSFCFSGHNWHMLNGCKVCSLCGAEDEGGL*
Ga0075474_100096994	F099216	GGA	MQVHDMEVGQSVKVPNATVKQGQRGTSWARRKANSCRRFAVTESGSGVIIERLPDRELVTDAIRKGGEKIFVRQSVETARQAIRRAIRAGELSGFWHVEPSGSGSMLQRMETQADVDAAAAEYRRWIRARR*
Ga0075474_100096995	F016522	GGA	MVHMVYKLDAVGRRRWLVGQLTAGDMAEEITRKPISRHGWSPQQGDAQRFSTEPEARAAADAVDHAVRRLGLCQVMEVV*
Ga0075474_100096996	F013880	GGAGG	MARFIPESEHANSLTRLYDNMEVGDEARVLRSRDMAYVLLKSVWYNRGRPEKMARGEDVPWLYLEPAVARVNGEVIEATMVLRVADEVECWARRKKFLKEGVV*
Ga0075474_100096998	F034164	GGAGG	MSRPKFEQLTQDEIDARAAKIRAEWPEHRWRKEKPGEPAVQAQVVKLDKRWNGVLM*