Scaffold Ga0066382_10114674

Overview

Basic Information

• Taxon OID: 3300006013
• Scaffold ID: Ga0066382_10114674
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 940
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F022429	Metagenome / Metatranscriptome	214	Y
F054945	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066382_101146741	F005464	GGA	VGLKDENAIRVGGWILSLLCILIGSYFVWPHIHVALLGITFFYFGVKIFNFSTLKEYAKKRQQLLTKLQGW*
Ga0066382_101146742	F022429	AGG	MADLIGFSEIWNGPSFLNRGASARRMAERDAEGKKKREKSGKLKAGEHFAKDWDKDLWD*
Ga0066382_101146743	F054945	N/A	MKWVVLIYLAMWTNTPEVMKYTVLEFPAHDYYDCIDIAEEINDIETAYNSETAYVRSFYWVYNNMLDEIKAECVYADPAAPVPKWSKK*