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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005994 Open in IMG/M |
| Scaffold ID | Ga0066789_10002142 Open in IMG/M |
| Source Dataset Name | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8601 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Alaska, USA | |||||||
| Coordinates | Lat. (o) | 68.6135 | Long. (o) | -149.3144 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022474 | Metagenome / Metatranscriptome | 214 | Y |
| F029822 | Metagenome / Metatranscriptome | 187 | Y |
| F073174 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0066789_100021423 | F029822 | AGGAGG | VKTTLSAVALLVALSLSAAAANPKKPASSQHRAGDPSIPLQTPKFNPASVPPSLCSPCLFYGGDLNPNDINAAGMSDENTLLITGGSSTYAAVNIPAGVTATVYGILFNVQADAAFDPVVASYDVRTGVSEGSGGTSIASGSGTAVVQPTGRNFLGLNEYTVAVSWSTPVTLTTGEYWFNVTPQCLNTNDGSCSVFRQFVSNTTHGANNIHGNWQPVHEMFLNSSFFGFTWANWCDSSLGFNGNQCGYMSYGLRGTK* |
| Ga0066789_100021424 | F022474 | AGGAGG | VKTTLLAATLVVALTLSAAAAQKPAPSQHLAGNNQVAKISPPGVPPTLCDPCLFYGGDLNTASVNAVGMSDENTLLILGGSGTYTSFTLTGISANVTGILFNIQADANFDPQNATYDVRSGVTEGNGGVSLASGTAAIAVSPTGRNFLGLNEYSVAVQLPTPLLIGPGEYWFNITPACTNATSDGSCSVGRMFLSNTTNRTNNVNGAAQVPYEMFLNSSFFGFTWANWCDSSLGFNSNQCAGASWGLMGNLQ* |
| Ga0066789_100021427 | F073174 | N/A | MSDFARLAVVPLPTPQERRRRQVMLARVMIVAIDIVLAGDPLGLETARDLIREVEHTFPELAAERGEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |